#!/usr/bin/env bash

CIS_X_REF_EXP_HOME=$(realpath $(dirname $0)/..)

CONFIG=$1
RESULTS_DIR=$2
EXP_MATRIX=$3

if [ $# -lt 3 ]; then
    basename $0
    echo
    echo "USAGE:"
    echo "    cis-X ref-exp generate <config> <results-dir> <exp-matrix>"
    exit 1
fi

perl $CIS_X_REF_EXP_HOME/src/cis-X.refexp.step2.pl $CONFIG $RESULTS_DIR $EXP_MATRIX
